DOI > 10.5291/ILL-DATA.9-13-592

This proposal is publicly available since 08/05/2020

Title

The spatial variation of the persistence length along Widom-601 DNA

Abstract

The persistence length of DNA is a quantity used to define the flexibility of the molecule. It is a key parameter to describing the conformation of DNA and, as a result, many biological functions of the molecule including how it packs and its interaction with proteins and membranes. The persistence length is probably not constant along the length of the molecule, however. One biological function that may be strongly influenced is histone positioning, which may be driven by local variations in the persistence length. The commonly investigated Widom-601 DNA molecule is known to have a strong histone positioning effect. Spatial variations in the persistence length will result in changes in the conformational structure of DNA, and these will be observable in scattering experiments. We propose to use SANS to measure the conformational structure of Widom-601 in solution as a function of temperature to determine the spatial variation in the persistence length along its helical axis.

Experimental Report

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Data Citation

The recommended format for citing this dataset in a research publication is in the following format:

Adrian Gonzalez; ANGUELOV Dimitar; S. Cuesta-Lopez; JOHNSON Mark Robert; MARTY RODA Marta; PEYRARD Michel; PORCAR Lionel; THEODORAKOPOULOS Nikos; TONCHEV Ognyan; VALLE ORERO Jessica; VAN EIJCK Lambert and WILDES Andrew. (2015). The spatial variation of the persistence length along Widom-601 DNA. Institut Laue-Langevin (ILL) doi:10.5291/ILL-DATA.9-13-592

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Metadata

Experiment Parameters

  • Environment temperature

    5 -100 C (+/- 0.1)
  • Experiment moment

    0.001 - 0.5 A^-1

Sample Parameters

  • Formula

    • Widom-601 DNA
    • RF III DNA